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ensembl release
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9
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3.5k
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Correct version of EnsDb.Hsapiens for ensembl transcriptome
ensembldb
ensembl release
rnaseq
salmon
tximport
6.3 years ago
emmak
▴ 20
4
votes
9
replies
3.0k
views
News:
Ensembl release 84 is out!
ensembl
mart
release84
biomart
ensembl release
News
updated 8.1 years ago by
arielpaulson
▴ 20 • written 8.2 years ago by
Thomas Maurel
▴ 800
1
vote
0
replies
1.1k
views
News:
Ensembl release 85 is out!
ensembl
biomart
release85
ensembl release
mart
News
7.8 years ago
Thomas Maurel
▴ 800
1
vote
1
reply
1.2k
views
News:
Ensembl release 86 is out!
ensembl
biomart
ensembl release
ensembl mart
News
7.6 years ago
Thomas Maurel
▴ 800
0
votes
0
replies
1.6k
views
News:
Ensembl 83 is out!
ensemble mart
ensembl
biomart
ensembl release
News
8.4 years ago
amonida
▴ 20
0
votes
2
replies
1.4k
views
Txtimport for kallisto on hg38 v87
txtimport
deseq2
ensembl release
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
jarod_v6@libero.it
▴ 40
6 results • Page
1 of 1
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Replies
Comment: Cannot connect to ExperimentHub server
by
Jiayu
• 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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